PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013230m
Common NameCARUB_v10013230mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CPP
Protein Properties Length: 622aa    MW: 68467.1 Da    PI: 5.6232
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013230mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.9e-15432470240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+C+C+kskClk+YC+Cfaag +C e C+C++C+Nk 
  Carubv10013230m 432 SCKRCKCRKSKCLKLYCDCFAAGLYCVEPCSCQNCFNKP 470
                      589**********************************96 PP
2TCR51.52.1e-16518556240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +++gCnC+ks ClkkYCeC+  g+ Cs++C+C +CkN+ 
  Carubv10013230m 518 HTRGCNCRKSGCLKKYCECYMMGVGCSSNCRCMGCKNNF 556
                      889**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-16431472IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.157432557IPR005172CRC domain
PfamPF036381.6E-10434469IPR005172CRC domain
SMARTSM011142.2E-19517558IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.5E-12520555IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MDTPEKNRIS AVSFRNFEDS PVFQYINDLS PIEPVKPPRS DNILHSLAFT SPSSLFSSPQ  60
LNSYRDSRFS IKRHRTLDLS SPVVVIGETV KNSPDALEAV KITGLSEEQL KCRPARLANV  120
SETKPFKEQL SLAIELADSL KNGREGCDSQ MVSCDEEPMD AENEIGRSGG LRELSDELCR  180
QTNDSLDFDA GSDGVLQTEE MGTVSVFGAE NAMLEVAGIQ NSEQQIPKIT DPKFYSFASE  240
PLQFSICCNN SVNVVEPRGS CSVQISPGAP EITLNRSSKV AAIASIAEAE CKEDTGLQPS  300
RKQQSVRRRC LTFDVGGSHK KIPLRDSTND LPLHSASISK APSPQECLET SKQDTDEIIP  360
IPRTIGLHLN SFVNPSVSSD RKKKKINDDR DLGYSDVKIM EAPERSMEGE SFDQHMATKN  420
RKLSQGLDEL GSCKRCKCRK SKCLKLYCDC FAAGLYCVEP CSCQNCFNKP IHEDLVIKAR  480
EVIEARNPLA FAPKVVSTSD SAIDLWDENS KTPASARHTR GCNCRKSGCL KKYCECYMMG  540
VGCSSNCRCM GCKNNFIHKN EKCEGESDAV TINDEAKDND DHADASSQNE DASKSERRNC  600
VLLQSPVAFR SLASLRKLSE L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1943455412120Protein lin-54 homolog
5fd3_B3e-1943455412120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013230m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039260.0BT003926.1 Arabidopsis thaliana clone RAFL15-25-I04 (R20696) unknown protein (At3g04850) mRNA, complete cds.
GenBankBT0050100.0BT005010.1 Arabidopsis thaliana clone U20696 unknown protein (At3g04850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297222.10.0protein tesmin/TSO1-like CXC 4 isoform X2
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLR0HXB60.0R0HXB6_9BRAS; Uncharacterized protein
STRINGXP_006297222.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein