PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013501m
Common NameCARUB_v10013453mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 504aa    MW: 55263.9 Da    PI: 7.7595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013501mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.4e-12155178326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C ++++t tCk+Gd+CkF H+
  Carubv10013501m 155 EKDCTHYMQTRTCKFGDSCKFDHP 178
                      678********************9 PP
2zf-CCCH34.24.3e-11204230127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ +t  CkyG+rCkF+H++
  Carubv10013501m 204 PGEPDCPYYIKTQRCKYGSRCKFNHPR 230
                      5789*********************96 PP
3zf-CCCH37.15.4e-12249273327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C f+++tG Ck+G +CkF+H++
  Carubv10013501m 249 EPMCTFYMKTGKCKFGLTCKFHHPK 273
                      689********************96 PP
4zf-CCCH38.32.2e-12323348227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+f+++tG CkyG++C+++H++
  Carubv10013501m 323 GEVDCPFYLKTGSCKYGATCRYNHPE 348
                      6899********************96 PP
5zf-CCCH40.35.4e-13403427226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+++++tG+Ck+G+rC+F+H+
  Carubv10013501m 403 GQSECDYYMKTGECKFGERCRFHHP 427
                      7899********************8 PP
6zf-CCCH41.81.8e-13458481427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C+++++tGtCk+G++CkF H+p
  Carubv10013501m 458 VNCPYYMKTGTCKFGATCKFDHPP 481
                      68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.169152180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5153179IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018154179IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9155178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5158177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652203231IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-5203230IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7205230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6208232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6209232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3246274IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4246273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6249274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5251272IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9252273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859321349IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6321348IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-5327348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047401429IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6401428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7402431IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10403427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6407428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169454482IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7454481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5458481IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-11458481IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5460479IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAHRQLYSYA LHHQPSYAAA SAVSPAPPPQ PQPPKTALSS LYGSSSVDHY YPDTTFRFLA  60
RDGSEALSNY NSGTLTSSSA MYHHLPNTTA SHLAYPQLLQ HQEAAWPPGV EVPAAASAVE  120
PLPPGVKRTS EDYFTKRPKL ESTSHLPIYP QRAGEKDCTH YMQTRTCKFG DSCKFDHPVW  180
VPEGGIPDWK EAPVVPNEEY PERPGEPDCP YYIKTQRCKY GSRCKFNHPR AEAAATVENQ  240
DALPERPSEP MCTFYMKTGK CKFGLTCKFH HPKDIQIPSS SQDNGSSEGL TSDPDATNNP  300
HVTFTPALYH NSKGLPVRPL LQGEVDCPFY LKTGSCKYGA TCRYNHPERT AFIPQATGIN  360
YSLLSSNAAN LNLGMVTPAT SLYQTLSQPT LGGLSATYPQ RPGQSECDYY MKTGECKFGE  420
RCRFHHPADR LSATTKQAPQ QPNVKLSLAG YPRREGAVNC PYYMKTGTCK FGATCKFDHP  480
PPGEVMAKTT SEADAAGAAD TTQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013501m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641285.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLR0G4B10.0R0G4B1_9BRAS; Uncharacterized protein
STRINGCagra.5641s0032.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)