PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013509m
Common NameCARUB_v10013509mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 502aa    MW: 55761.3 Da    PI: 5.961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013509mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.51.2e-931314992374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      ve L++++++v+s++l+laq +L+rl+++ +sp+g+p++R+a+yf+eAL + +++      +  + + +s+++ ++++ a+k fs vsPi+ fs
  Carubv10013509m 131 VEDLIRVVNCVDSDELQLAQVILSRLNQRlRSPTGRPLERAAFYFKEALGSLITG-----TNRNQNRLSSWSEIVQKIRAVKEFSGVSPIPLFS 219
                      689*************************99*************************.....6777888888999********************* PP

             GRAS  95 hltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                      h+taNq+Il+++          H++Df+i+ G+Q+++L++++a+++ +g   lR+T+v+   ++s+ e++ ++e+La+fA+ l+++f+++++++
  Carubv10013509m 220 HFTANQTILDSLTVRssspPYAHVVDFEIGFGGQYASLMREIAEKSvNGIGFLRVTAVVT--EDSAVETRLVKENLAQFAADLKIRFQIEFVLM 311
                      ***********99884455566************************99999*********..459***************************** PP

             GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdslea 273
                      +++e l++++ r+ +gE ++V l+  ++r l       + ++ +++ ++++sPkvvv+v++e    ++ +++sF ++f++ le+y+++f+sl+a
  Carubv10013509m 312 RTFEVLSFKAVRFVEGERTVVLLSPVIFRRL-------NGISGFVNDLRRVSPKVVVFVDSEgwtgISGGAGSFQREFVSGLEFYTMVFESLDA 398
                      ******************************9.......33567*******************6654445778********************99 PP

             GRAS 274 klpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                       +++       ++ +E+++l+++i ++v +  ++   r  ++++Wre++ +aG++ vpls+++  qa++l++k +++g++v +++g+l+l+W++
  Carubv10013509m 399 AVASPGggdLVKKIIEAFVLRPKIASAVEAGADK---RGGEMMTWREAFCAAGMRMVPLSQFVDFQAECLVEKAQVRGFHVAKRQGELMLCWHE 489
                      98876655588999**************999998...888899*************************************************** PP

             GRAS 365 rpLvsvSaWr 374
                      r+Lv++SaWr
  Carubv10013509m 490 RSLVATSAWR 499
                      *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.608104479IPR005202Transcription factor GRAS
PfamPF035144.2E-91131499IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MRAPASSDNT NSNSNLICYN NEPTSVLDLR RSPSPATAEE KPVGNNNTNQ FPIEDDHHHH  60
HVMRSMDWDS IMKELELDDD STPTLKSNFP TFAISPPLPV FPDQFHPPEF PGHGHGFIDN  120
NNEGGGGFDF VEDLIRVVNC VDSDELQLAQ VILSRLNQRL RSPTGRPLER AAFYFKEALG  180
SLITGTNRNQ NRLSSWSEIV QKIRAVKEFS GVSPIPLFSH FTANQTILDS LTVRSSSPPY  240
AHVVDFEIGF GGQYASLMRE IAEKSVNGIG FLRVTAVVTE DSAVETRLVK ENLAQFAADL  300
KIRFQIEFVL MRTFEVLSFK AVRFVEGERT VVLLSPVIFR RLNGISGFVN DLRRVSPKVV  360
VFVDSEGWTG ISGGAGSFQR EFVSGLEFYT MVFESLDAAV ASPGGGDLVK KIIEAFVLRP  420
KIASAVEAGA DKRGGEMMTW REAFCAAGMR MVPLSQFVDF QAECLVEKAQ VRGFHVAKRQ  480
GELMLCWHER SLVATSAWRF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1616549937375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013509m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297491.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0HL020.0R0HL02_9BRAS; Uncharacterized protein
STRINGXP_006297491.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]