PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013548m
Common NameCARUB_v10013548mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 490aa    MW: 54658 Da    PI: 6.4558
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013548mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083123491954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Carubv10013548m 312 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 349
                      554458******************************88 PP
2BELL125.91.5e-40174245172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+k +kLls+l+eVd+ Ykqy++q+q+v+ssF+++ag+g+akpYtslAl++iSrhFrcL+dai++qi
  Carubv10013548m 174 ERQELQSKLSKLLSILDEVDRTYKQYYHQMQIVVSSFDVIAGCGAAKPYTSLALQTISRHFRCLRDAISGQI 245
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-69116243IPR006563POX domain
PfamPF075265.4E-45122242IPR006563POX domain
PROSITE profilePS5007111.564290353IPR001356Homeobox domain
SMARTSM003895.9E-9293357IPR001356Homeobox domain
CDDcd000862.49E-11293354No hitNo description
SuperFamilySSF466895.99E-17294360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-27296359IPR009057Homeodomain-like
PfamPF059209.1E-18310349IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MATYYKTGSS EIYSRPNVQD FVPGNAMVYT NSYSETFPRE STNINVSASK EIQVLSSFGG  60
ASQQMLEVQD SGSWRDQEDN DRSCFPVMMR LGLSSQIETS RSNNNNEYAN ATHVVSGFTR  120
TIHNSKYLKA AQELLDEAVN VKKALKQFQP EGDKIGEEKE KFLQTNVAEI PQAERQELQS  180
KLSKLLSILD EVDRTYKQYY HQMQIVVSSF DVIAGCGAAK PYTSLALQTI SRHFRCLRDA  240
ISGQILVIRK SLGGEHDGSD GRGVGISRLR NVDQQVRQQR TLQRLGVMQP HTWRPQRGLP  300
DSSVLVLRAW LFEHFLHPYP KDSDKIMLAR QTGLSRGQVS NWFINARVRL WKPMVEEMYK  360
EEFTDSLEEN DPNLSSENTP EITEIQEQQT ESSSNNGNVS GLASSSMGQS TVARGGAQFM  420
MVSDMTGNGS GGMSLTLGIQ NSDARGDVPM SGGIVHYENT ISGTDFQYLN SHNHQHRLGS  480
SKLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-15299357563Homeobox protein Meis2
3k2a_B8e-15299357563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013548m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567960.0AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006090.0BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297524.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLR0G4L10.0R0G4L1_9BRAS; Uncharacterized protein
STRINGXP_006297524.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]