PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013683m
Common NameCARUB_v10013683mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 454aa    MW: 49609 Da    PI: 4.5956
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013683mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.58.5e-38138236298
           DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+
  Carubv10013683m 138 LFQRLWTDEDEIELLRGFLDYmTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISR 231
                      79*******************888999999999************************************************************* PP

           DUF573  94 kiWgs 98 
                      kiW++
  Carubv10013683m 232 KIWNQ 236
                      ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-34139235IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEG GVGESDTDED LRDNDDVVLP ESNDVEAEAE AEAEDDDPEE  60
EDLNSPSTSS LAMVSTISTT AVVSGTPTTA SSTGAVTVAL PAGSAVPVSV IPVDSDPKWH  120
RMTEIVHQRP PIDDSRRLFQ RLWTDEDEIE LLRGFLDYMT THRGSSSHPP DTAPFYEQIK  180
SKLQLDFNKN QLVEKLRRLK KKYRNVMSKI SSGKEVFFKS PHDQSTFEIS RKIWNQTGKI  240
IGFEDNNVMD FEETNNHHNT NGNYSTFNSP VSNPELDSEN GIEKKLTMSS SSGSRKRSRS  300
RIGKIEEDNK PTLAPCDGHI PNAASNVNLN ETAAAISIGG NLGGLIEETV KNCVSPVIKE  360
LMNGTTSMMM AAMGGGFPGS GGGAHGFGSL SPLFTRPLNF GFGVEGGGNK AVAEERWRKQ  420
QILELEVYSR RLELVQEQIR TTLNELKTMP SGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013683m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0701360.0AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297660.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGXP_006297660.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.10.0DNA-binding storekeeper protein-related transcriptional regulator