PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013867m
Common NameCARUB_v10013867mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 402aa    MW: 44860.3 Da    PI: 5.7462
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013867mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-32198252155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l l++ +gLt++hvkSHLQkYR+
  Carubv10013867m 198 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLMLINSPGLTIYHVKSHLQKYRT 252
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.673195255IPR017930Myb domain
SuperFamilySSF466894.66E-16196252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-29197254IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-23198252IPR006447Myb domain, plants
PfamPF002492.6E-9200251IPR001005SANT/Myb domain
PfamPF143791.0E-21286333IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNNNPVPCQA FPLVSGGSSS GGNLFSSSPG FCNGVYVSSS SQARPPVSTV PRGSMTVPQS  60
SIEGQRQECS IDTQSLQVIN QPQQQKNMTW SSDQLQGFFD FPVPDPQAES SRTIVSSKEV  120
HSKNEWPEWA DQLMSDDVLI PNWPELLGDP NVLNLDSKIT TPSPDIARRE IVFNDQRHVD  180
PSMDLNTKNS PASSMTSKQR MRWTPELHEA FVEAINQLGG SERATPKAVL MLINSPGLTI  240
YHVKSHLQKY RTARYKPDLS ENKEEPPVKN LKTIEDIKSL DLKTSIEITE ALRLQMKVQK  300
QLHEQLEIQR SLQLQIEEQG RYLQMMIEKQ QKMQEDKKES SFSSSMPEAD PSAPSQNLSQ  360
VFLPKATNSD PSITQKLQSG FNTMGQSESA SGSNRKRVRE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-28198256260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013867m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186300.0AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
GenBankBT0053520.0BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297831.10.0myb family transcription factor PHL13 isoform X2
RefseqXP_023642523.10.0myb family transcription factor PHL13 isoform X1
RefseqXP_023642524.10.0myb family transcription factor PHL13 isoform X2
RefseqXP_023642525.10.0myb family transcription factor PHL13 isoform X2
RefseqXP_023642526.10.0myb family transcription factor PHL13 isoform X2
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLR0HLZ50.0R0HLZ5_9BRAS; Uncharacterized protein
STRINGXP_006297831.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]