PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013989m
Common NameCARUB_v10013989mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 369aa    MW: 40794.9 Da    PI: 7.2525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013989mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08279319954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Carubv10013989m 279 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 319
                      69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13275330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-13276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.25E-11276324No hitNo description
Gene3DG3DSA:4.10.280.106.7E-12278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-6279319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCSAVIRTRI AFDLMEGLES VYAQAMYGMS RESKIMEHQG SDLIWGGNEL MMARGLCSSS  60
SSYHHQLINP NLSSCFMSDL GVIGEVQQQQ HVGNRAGSID PSSLDCLLSA TSNSNNTSTE  120
DDEGISVLFS DSQTLWSFGG VSSAESENRE ITTETKTTAI KPKSLKRNRG GDEKGSHFRL  180
VRPQDDSEKG GFKLIYDENQ SKSKKPRTEK ERGGSSNISF QHSTCVSDNA EPDAEAIAQM  240
KEMIYRAAAF RPVNFGLEIV EKPKRKNVKI STDPQTVAAR QRRERISEKI RVLQTLVPGG  300
TKMDTASMLD EAANYLKFLR SQVKALENLR PKIDPTNLSF SSAPPTFPLF HPSFLPLQNP  360
NQIHHPEC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013989m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886170.0AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013050.0AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203640.0BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297948.10.0transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLR0G6090.0R0G609_9BRAS; Uncharacterized protein
STRINGXP_006297948.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]