PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014289m
Common NameCARUB_v10014289mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YA
Protein Properties Length: 295aa    MW: 32386.7 Da    PI: 9.6964
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014289mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.4e-33156212158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF
  Carubv10014289m 156 QEPVFVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 212
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-36154215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.437155215IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-28157212IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.2E-24158180IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860160180IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.2E-24189212IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MHSKSDTGNK IDSEAHRTSP SSINSVNPWQ RAAAACDANS NVEAGDKPSK SIALESNGPK  60
SPSGRDDNAN KESNVTTSPS SAGEYSDKNQ EPLHPCITQP PHPQLVGHTV GWTSSNPYQD  120
PYYAGVMGAY GHHPLGFVPY GGMPHSRMPL PPEMAQEPVF VNAKQYQAIL RRRQARAKAE  180
LEKKLIKSRK PYLHESRHQH AMRRPRGTGG RFAKKTKTEA SQRKAEEKSN GCVTQSPTSS  240
NSDQAEAWNV EYRKPQGDDM QSSAYNRREE GECSGQQWNS LSSNHPSQAR LAIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-19156212258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014289m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4120560.0AF412056.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds.
GenBankAY0876960.0AY087696.1 Arabidopsis thaliana clone 37744 mRNA, complete sequence.
GenBankAY0939710.0AY093971.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641434.10.0nuclear transcription factor Y subunit A-9 isoform X1
SwissprotQ945M90.0NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLR0G6A80.0R0G6A8_9BRAS; Uncharacterized protein
STRINGXP_006298229.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.10.0nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]