PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014310m
Common NameCARUB_v10014138mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 289aa    MW: 32786.4 Da    PI: 7.2514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014310mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-08193239555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++ Lq
  Carubv10014310m 193 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 239
                      999**********************9....677***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16186256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-6186243No hitNo description
PROSITE profilePS5088814.284188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16189257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLEGLVCQES LDMSVLERLK WLQQQQHQLQ HVVSQSSNNS PELLQQILQL HGSNNDELLQ  60
GGFSQFQMIG SGFGPNYNMG YVPSHEAMDG CISRTSSCQM DPVDAMDVLL KNGEEDKPIS  120
LKNKRKAEVK TREEEKTEKK IKVEAETESS MKGKPNMRNT EASSKETLKE VSEIPKLDYI  180
HVRARRGQAT DRHSLAERAR REKISKKMKY LQDIVPGCNK VTGKAGMLDE IINYVQCLQR  240
QVEFLSMKLA VLNPELELAM EDASVKQVKT HPLDPKDQNC YYSRTHHL*
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014310m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4120990.0AF412099.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds.
GenBankAY0780300.0AY078030.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298096.10.0transcription factor HBI1 isoform X1
SwissprotQ9ZPW31e-149HBI1_ARATH; Transcription factor HBI1
TrEMBLR0I3T00.0R0I3T0_9BRAS; Uncharacterized protein
STRINGXP_006298096.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-125bHLH family protein