PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014475m
Common NameCARUB_v10014475mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 250aa    MW: 27081.1 Da    PI: 9.0475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014475mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-202575155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr ++ +gr++AeIrdp +   + r++lg+f++aeeAa+a++ a+++l+g
  Carubv10014475m 25 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDTAARNLRG 75
                     68********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.55E-312585No hitNo description
PfamPF008471.8E-132575IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-222685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-322683IPR001471AP2/ERF domain
SMARTSM003806.3E-392689IPR001471AP2/ERF domain
PROSITE profilePS5103223.9992683IPR001471AP2/ERF domain
PRINTSPR003677.3E-112738IPR001471AP2/ERF domain
PRINTSPR003677.3E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MRKGRGSSVV GPALPVTAGG SVKEPRYRGV RKRPWGRFAA EIRDPLKKSR VWLGTFDSAE  60
EAARAYDTAA RNLRGPKAKT NFPIDCSPSS PLNYHHNQNQ NQNQNLCSAA AAPANQNQNQ  120
IDPFMDHRLY GGGNFQNQQQ QIISRPASSS MSSTVKSCSG PRPMEAASSS VAKPLHATKR  180
YPRTPPVAPE DCHSDCDSSS SVIDDGDDIA SSSSRRKPPF QFDLNFPPLD GVDLFAGATD  240
DLHCTDLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-211992781Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014475m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240361e-138AB024036.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC12.
GenBankAB0322011e-138AB032201.1 Arabidopsis thaliana mRNA for ERF transcription factor 7, complete cds.
GenBankAK2284601e-138AK228460.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding factor, complete cds, clone: RAFL15-05-J12.
GenBankAY0372541e-138AY037254.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds.
GenBankAY0850231e-138AY085023.1 Arabidopsis thaliana clone 124720 mRNA, complete sequence.
GenBankAY0940011e-138AY094001.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds.
GenBankCP0026861e-138CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298403.10.0ethylene-responsive transcription factor 7
SwissprotQ9LDE41e-124ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLR0G7510.0R0G751_9BRAS; Uncharacterized protein
STRINGXP_006298403.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-89ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]