PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014554m
Common NameCARUB_v10014365mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 228aa    MW: 24504.6 Da    PI: 10.1195
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014554mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.74.3e-20151185135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  Carubv10014554m 151 CQHCGAEKTPQWRAGPSGPKTLCNACGVRYKSGRL 185
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-17145195IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-15148208No hitNo description
PROSITE profilePS5011412.281148181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15149183IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-14150197No hitNo description
PfamPF003201.4E-17151185IPR000679Zinc finger, GATA-type
PROSITE patternPS003440151176IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFLVNGPGVV EEEDLEWISN KDAFPVIETF VGVLPPEHFR VTSPERVATE IKQLSPVSVL  60
ETSSHNSSTT TSTTTTTSNS SGGSTAVTTT TAATLMSCCV SFKAPAKARS KRRRTGRRDL  120
RVLWTGNEQG GGGGGIQKKK TTAAVIMGRK CQHCGAEKTP QWRAGPSGPK TLCNACGVRY  180
KSGRLVPEYR PANSPTFTAE LHSNSHRKIV EMRKQYQSGD GDRKDCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014554m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274931e-118AK227493.1 Arabidopsis thaliana mRNA for GATA transcription factor 1, complete cds, clone: RAFL14-11-O16.
GenBankAP0012971e-118AP001297.1 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13.
GenBankBT0244971e-118BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds.
GenBankCP0026861e-118CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankY136481e-118Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298300.11e-168GATA transcription factor 1 isoform X2
SwissprotQ8LAU91e-104GATA1_ARATH; GATA transcription factor 1
TrEMBLR0I4E21e-167R0I4E2_9BRAS; Uncharacterized protein
STRINGXP_006298301.11e-119(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-94GATA transcription factor 1