PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014605m
Common NameCARUB_v10014603mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24964.9 Da    PI: 5.0699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014605mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1958111457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      ++++++eq++ Le  Fe ++++  e++ +LA +lgL+ rqV vWFqNrRa++k+
  Carubv10014605m  58 KRKLSDEQVRMLEISFEDDHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 111
                      45899***********************************************95 PP
2HD-ZIP_I/II121.54.2e-3957148293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +kr+ls+eqv++LE sFe ++kLe+erK +la eLgl+prqvavWFqnrRAR+k+k++E +y++Lk+ay++++ +++rL++ev +L+e+l+e
  Carubv10014605m  57 RKRKLSDEQVRMLEISFEDDHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYENVVVDKCRLDSEVLQLKEQLNE 148
                      8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.76352112IPR001356Homeobox domain
SMARTSM003891.4E-1955116IPR001356Homeobox domain
SuperFamilySSF466894.71E-1855119IPR009057Homeodomain-like
CDDcd000866.80E-1757113No hitNo description
PfamPF000461.2E-1658111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-2059118IPR009057Homeodomain-like
PRINTSPR000313.5E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000313.5E-592108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNNQNVDDHN LLLISQLYPD VYTPLVPQQG EAKQARRRKR KSKSVAVAEE GGNGWFRKRK  60
LSDEQVRMLE ISFEDDHKLE SERKDRLALE LGLDPRQVAV WFQNRRARWK NKRVEDEYTK  120
LKNAYENVVV DKCRLDSEVL QLKEQLNEAE REIQRLAQRV EGTLSNSPIS SSVTVEANHA  180
TPFFGDYDIG VDGDGDNLIY SSDYIDGLEW MSQFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13859KRKSKSVAVAEEGGNGWFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014605m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0313620.0BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298525.11e-159homeobox-leucine zipper protein ATHB-21 isoform X2
SwissprotQ9ZU701e-140ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLR0I4Z61e-157R0I4Z6_9BRAS; Uncharacterized protein
STRINGXP_006298526.11e-156(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-120homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]