PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10014621m

Common Name

CARUB_v10014621mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 212aa MW: 24424.7 Da PI: 8.4863

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10014621m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.3	1.5e-29	47	136	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ +GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka ++vk+ek+gkw+vtk+++eHnH+l+p Carubv10014621m 47 SFYDSYATVMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRLRPRR-SESRKPRAITREGCKALIVVKREKSGKWVVTKFVKEHNHPLSP 136 5******************************************99.9*************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-28	47	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEEHSQPEEE EEMMESSDGK YIVTNETSPL VEPFIGMEFE SEASAKSFYD SYATVMGFVM 60 RVDAFRRSMR DGTVVWRRLV CNKEGFRRLR PRRSESRKPR AITREGCKAL IVVKREKSGK 120 WVVTKFVKEH NHPLSPNVGR SSQLSQTPKD AKIRELSAEL SRERKRCAAL QQQLDMVLEE 180 MEEHSNHLST NINNVIQSVR EIESTTFTKP L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10014621m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004031	1e-171	BT004031.1 Arabidopsis thaliana clone RAFL15-31-E07 (R20864) unknown protein (At3g07500) mRNA, complete cds.
GenBank	BT005083	1e-171	BT005083.1 Arabidopsis thaliana clone U20864 unknown protein (At3g07500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023642497.1	1e-142	protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBL	R0G2U4	1e-154	R0G2U4_9BRAS; Uncharacterized protein
STRING	XP_006296738.1	1e-155	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-107	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Carubv10014621m
Entrez Gene	17893329