PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014665m
Common NameCARUB_v10014665mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 203aa    MW: 22153.9 Da    PI: 9.6123
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014665mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.2e-185690135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++
  Carubv10014665m 56 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 90
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.2155086IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-1250105IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-115191No hitNo description
Gene3DG3DSA:3.30.50.107.8E-155490IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.14E-1255110No hitNo description
PROSITE patternPS0034405681IPR000679Zinc finger, GATA-type
PfamPF003203.8E-165690IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVLIVINFFP FSKMSEGSEE TKTKIDSAEE LSDVDNENCS SSGSGGGSCG ETKRTCVDCG  60
TIRTPLWRGG PAGPKSLCNA CGIKSRKKRQ AALGMRSDEK KKNRKSNSSN DLNLDHRNAK  120
NNKINRDDDD NDDHHKTCNS KSSSSSNITN NNKGVSKFLD LGFKVPVMKR SAVEKKRLWR  180
KLGEEERAAV LLMALSCSSV YA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014665m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642276.11e-135GATA transcription factor 17
SwissprotQ9LIB54e-93GAT17_ARATH; GATA transcription factor 17
TrEMBLR0HP191e-145R0HP19_9BRAS; Uncharacterized protein
STRINGXP_006298581.11e-145(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.12e-71GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]