PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014872m
Common NameCARUB_v10014872mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 142aa    MW: 16451.3 Da    PI: 10.2225
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014872mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.6e-1125120390
                      EE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
               B3   3 kvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 
                      k+l+ sdv  + +rl+lp++f+++        ++++  ++ + ++ ++ ++  + ++ +k+    vlt+GWkeFv    L  + Dfv+  + ++
  Carubv10014872m  25 KQLKLSDVDGNqSRLMLPRQFVAKSivpyleaSENPSVGINVLVYGPDRKVQHMIFKLWKRA--PVLTSGWKEFVTKYSLMkTSDFVTVWVFRH 116
                      77777888766699*******99889****99777778899999999996655555448876..89*************97699*998665444 PP

                      .SEE CS
               B3  88 .sef 90 
                       +++
  Carubv10014872m 117 lKTR 120
                      4555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1422127IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-1223126No hitNo description
SMARTSM010193.4E-623126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-1323124IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVQSEPVPPE IFDEVPRPFN KPLKKQLKLS DVDGNQSRLM LPRQFVAKSI VPYLEASENP  60
SVGINVLVYG PDRKVQHMIF KLWKRAPVLT SGWKEFVTKY SLMKTSDFVT VWVFRHLKTR  120
KLCFAIDHIR YPLMENQEGS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014872m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505731.19e-52PREDICTED: putative B3 domain-containing protein At4g03170
SwissprotQ9ZR141e-47Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLR0G2K91e-100R0G2K9_9BRAS; Uncharacterized protein
STRINGXP_006296633.11e-101(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-50B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]