PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014873m
Common NameCARUB_v10014873mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 142aa    MW: 15749.1 Da    PI: 5.0294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014873mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-191364256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +g+++AeIrd      ++ +r++lg+f taeeAa+a+++a+ +++ge
  Carubv10014873m 13 KYRGVRTRP-WGKYAAEIRD----SaRHgARVWLGTFHTAEEAARAYDRAAFSMRGE 64
                     8*****999.**********....33236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-231373IPR016177DNA-binding domain
SMARTSM003803.5E-351377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-311373IPR001471AP2/ERF domain
CDDcd000181.72E-271372No hitNo description
PROSITE profilePS5103223.4061371IPR001471AP2/ERF domain
PfamPF008476.0E-141364IPR001471AP2/ERF domain
PRINTSPR003673.6E-111425IPR001471AP2/ERF domain
PRINTSPR003673.6E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MERRESSNTN EVKYRGVRTR PWGKYAAEIR DSARHGARVW LGTFHTAEEA ARAYDRAAFS  60
MRGERAVLNF PHEYPMMRNG PSSGYGNVVA PSSTEYGGGG GGGGGNGKEV IEFEYLDDSL  120
LEELLDYGEN YNQDTWNDAN R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-351312014114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014873m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298771.11e-100ethylene-responsive transcription factor ERF095
SwissprotQ9LTC62e-47ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLR0HPH42e-98R0HPH4_9BRAS; Uncharacterized protein
STRINGXP_006298771.13e-99(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-41ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]