PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015085m
Common NameCARUB_v10015085mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 217aa    MW: 24843.9 Da    PI: 6.1659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015085mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-1589133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++d+ +++G+g+Wk+I+r+  k R++ q+ s+ qky
  Carubv10015085m  89 PWSAEEHRLFLDGLEKYGKGDWKSISRECVKSRSPMQVASHAQKY 133
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.55581138IPR017930Myb domain
SuperFamilySSF466894.04E-1784138IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-1685137IPR006447Myb domain, plants
SMARTSM007173.1E-1086136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1087132IPR009057Homeodomain-like
CDDcd001671.85E-1189134No hitNo description
PfamPF002493.5E-1189133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MASIPRWTRY DDKRFEIALA QIPDIERIAQ ILHKPVEEVE YYYNALVYDV ALIESGGIAL  60
PKYEEDYNLP PKKATESKSQ GIGRKKGIPW SAEEHRLFLD GLEKYGKGDW KSISRECVKS  120
RSPMQVASHA QKYFLRQSSD SKKGKRSSIH DVTLGYVDNV TVPGSNLNCM GHQPHFGDQL  180
PLDQFYHYDS QDNIGLFEDD DDGKCLARFE ELYYKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015085m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298960.11e-161transcription factor MYBS1
SwissprotQ9FNN66e-36SRM1_ARATH; Transcription factor SRM1
TrEMBLR0I6331e-160R0I633_9BRAS; Uncharacterized protein
STRINGXP_006298960.11e-161(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.25e-88MYB_related family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]