PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015086m
Common NameCARUB_v10015086mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 326aa    MW: 37177.4 Da    PI: 8.2676
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015086mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.1e-1420971396
                     TT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 13 sgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ++ l +p  f+ +h  g  +e++  ++l++  s  +W+vk+  ++++    lt+GW++F+ +++L++gD+vvF++dg+  f  +v+ 
  Carubv10015086m 20 TH-LNIPMAFFLRHiqGTTNEGNGVVKLRSfVSDITWQVKM--DGRR----LTQGWQKFATSHDLRVGDIVVFRHDGDLLF--HVTC 97
                     44.89*****999999666667779*****9999*******..9998....***********************8875444..6665 PP
2B343.65.4e-141502202799
                      ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++ k    +++l +e+g  W++ l+  k +g++++++GW++F+  n+L+++Df+++kl++ +++++v++++ +
  Carubv10015086m 150 NLRKDILGEIILLNEHGIPWTLILS-HKPDGEVYIRSGWRSFCITNRLRANDFLTLKLVQ-TGTTPVLQLCPS 220
                      444555669***************4.33344599************************98.888899999865 PP
3B344.23.5e-14228318191
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefe 91 
                      f++ +++++++k+  l+lp++f++++g++k++  ++tl ++ g + +  l+ + + gr+ l+k W+eF++ ng++ gD++ ++l+++  ++++
  Carubv10015086m 228 FLTLTLKPYNFKKYKLCLPRTFVKTNGIEKAR--KITLVNRYGIKRTTSLKPEDGYGRMRLGKEWREFCDVNGVNIGDSFELELIKEgeDTGS 318
                      67778899******************999766..7********999999977888889*************************9965424444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-193103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-194103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.5057101IPR003340B3 DNA binding domain
CDDcd100172.20E-15898No hitNo description
SMARTSM010195.2E-1710101IPR003340B3 DNA binding domain
PfamPF023621.8E-92190IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-15137222IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-15142221IPR003340B3 DNA binding domain
CDDcd100171.76E-13148219No hitNo description
PfamPF023628.1E-13150220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-13153220IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096158220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-16221323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16224314IPR015300DNA-binding pseudobarrel domain
CDDcd100174.61E-12227313No hitNo description
PfamPF023621.0E-12228317IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209228326IPR003340B3 DNA binding domain
SMARTSM010195.6E-14228326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPSSPVNPHF FRPLLPGFHT HLNIPMAFFL RHIQGTTNEG NGVVKLRSFV SDITWQVKMD  60
GRRLTQGWQK FATSHDLRVG DIVVFRHDGD LLFHVTCFGP SCCEFQYDDD DVIQLSSDYS  120
DSERNQNTAE AKSSSDDPHS CFVACVTESN LRKDILGEII LLNEHGIPWT LILSHKPDGE  180
VYIRSGWRSF CITNRLRAND FLTLKLVQTG TTPVLQLCPS STASQYRFLT LTLKPYNFKK  240
YKLCLPRTFV KTNGIEKARK ITLVNRYGIK RTTSLKPEDG YGRMRLGKEW REFCDVNGVN  300
IGDSFELELI KEGEDTGSHL LKFCSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015086m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894315e-42AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641259.10.0B3 domain-containing protein REM14
TrEMBLR0HQ080.0R0HQ08_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006298961.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-83B3 family protein