PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015289m
Common NameCARUB_v10015289mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 389aa    MW: 44487.4 Da    PI: 5.4009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015289mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.96.3e-30441751128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLpkkv.kaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      l pG++F P+d el+++yLk+  ++ +     + ++v i++v+iy ++P++L   + ka+++ w+f ++r kk  +gk+++ra ++gyW+at  
  Carubv10015289m  44 LVPGLKFVPSDTELINHYLKPYQRDGTyyypQP-FDVpIHHVNIYMSDPQQLSVDFeKANDEAWFFITERYKKGISGKKHKRADNEGYWNATVG 136
                      579*********************999898444.4666**************95440456778999999999999******************* PP

              NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++    +  vg  + L ++ g++p+ +ktdW+mhey+ 
  Carubv10015289m 137 AKTIAG-VEDGVGDVTALQYFIGEKPHDVKTDWLMHEYSY 175
                      ****99.7778***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-3533195IPR003441NAC domain
PROSITE profilePS5100535.58544195IPR003441NAC domain
PfamPF023651.4E-1546174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSMPSRNKRK ERSSDIASSS SSSSSSSSSA HDLASSSSTK PNLLVPGLKF VPSDTELINH  60
YLKPYQRDGT YYYPQPFDVP IHHVNIYMSD PQQLSVDFEK ANDEAWFFIT ERYKKGISGK  120
KHKRADNEGY WNATVGAKTI AGVEDGVGDV TALQYFIGEK PHDVKTDWLM HEYSYKSPND  180
DNDKVEYVLC KIYMTPSSVK LMKDEEKAMS KAKKGKGKLK VEVKQLEQPK CSLPLTQHHQ  240
EQQPKCSLPL TQHHQEQQPK CSLPLTQHHQ VQQPKCSLPL TQHHQEQQPK CSLPVLTQHH  300
QEQQPKCSLP PTQHQEQQCL PYDMDDDDFN DFDDFFDFVD SDPQPKDVED FFAEFMQTNS  360
LDGDDEDVPK DRDLLEGFFT DDDDKRLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-184420017170NO APICAL MERISTEM PROTEIN
1ut4_B5e-184420017170NO APICAL MERISTEM PROTEIN
1ut7_A5e-184420017170NO APICAL MERISTEM PROTEIN
1ut7_B5e-184420017170NO APICAL MERISTEM PROTEIN
3swm_A6e-184420020173NAC domain-containing protein 19
3swm_B6e-184420020173NAC domain-containing protein 19
3swm_C6e-184420020173NAC domain-containing protein 19
3swm_D6e-184420020173NAC domain-containing protein 19
3swp_A6e-184420020173NAC domain-containing protein 19
3swp_B6e-184420020173NAC domain-containing protein 19
3swp_C6e-184420020173NAC domain-containing protein 19
3swp_D6e-184420020173NAC domain-containing protein 19
3ulx_A6e-184419315166Stress-induced transcription factor NAC1
4dul_A5e-184420017170NAC domain-containing protein 19
4dul_B5e-184420017170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015289m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299146.10.0NAC domain-containing protein 41
TrEMBLR0HQL10.0R0HQL1_9BRAS; Uncharacterized protein
STRINGXP_006299146.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.16e-48NAC domain containing protein 64