PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015397m
Common NameCARUB_v10015397mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 229aa    MW: 25400.9 Da    PI: 4.4856
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015397mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57393.72e-29119211298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +fqr+wse+Dei+lLqGli++++ktg+s s+d++af++ +++sisf++++ +q+++Ki  L+kK+k+++ +     +  f++ehd  +fel kk
  Carubv10015397m 119 RFQRVWSEKDEIMLLQGLIEYQSKTGQSDSEDMNAFFHSIQRSISFEMKSvRQMTSKIWFLRKKYKNEKGQ-----KRCFTEEHDLTCFELVKK 207
                      69*********************************************96438*************998777.....889*************** PP

           DUF573  95 iWgs 98 
                      iWgs
  Carubv10015397m 208 IWGS 211
                      **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.2E-26120210IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAWESSSDEE EDSGFEEEEG GASTAKKTSV PESAPRESSN DEDEESASDK EEEEDSAPVV  60
ATGFAYAHVS ASLVAATASS DSKETESRSA PAPASSHKKR QITEVAAALT VAKRAKNVRF  120
QRVWSEKDEI MLLQGLIEYQ SKTGQSDSED MNAFFHSIQR SISFEMKSVR QMTSKIWFLR  180
KKYKNEKGQK RCFTEEHDLT CFELVKKIWG SEVIDSTIAE VDFTVPSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015397m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641969.11e-104probable transcription factor At4g00610
TrEMBLR0G9D61e-164R0G9D6_9BRAS; Uncharacterized protein
STRINGXP_006299248.11e-165(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-24DNA-binding storekeeper protein-related transcriptional regulator