PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015438m
Common NameCARUB_v10015438mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 379aa    MW: 41643.9 Da    PI: 5.0407
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015438mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573124.83.9e-39171266397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                      fqr+w+++Dei++LqGl+df+++tg+sp+d+++ +y+ vkk+isf+vsk q++eK+r+LKkK++++  k ak+g++p+f+k+hd+k+felsk  
  Carubv10015438m 171 FQRVWTDNDEIAVLQGLLDFRKDTGVSPYDNTNTVYQLVKKNISFDVSKVQFMEKLRSLKKKYENNLGKaAKNGDDPTFAKPHDRKAFELSKLA 264
                      9******************************************************************99899********************** PP

           DUF573  96 Wg 97 
                      Wg
  Carubv10015438m 265 WG 266
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.1E-32171266IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSKKREDPPP ASSSEEEVSE TRSGEDDESS SEGEDVVSSR KPSAVTMKPV VALAAPSEKQ  60
QVSDSESGSD EESDDSDSEP ENVETKPPLT QSKDSSVLKN EVSDSESEAE KKDDAVTKPT  120
NQDSKKVKSS ENSVAKRARE TDEGVSSDVK KVKKVVSASP SGEEEKKKSC FQRVWTDNDE  180
IAVLQGLLDF RKDTGVSPYD NTNTVYQLVK KNISFDVSKV QFMEKLRSLK KKYENNLGKA  240
AKNGDDPTFA KPHDRKAFEL SKLAWGAIEK AIESAVKSNG KSKQVACVKH EHDSSLVNAI  300
NCQDLSAKSS SLVRTLTRFG VDELAAQQGL DRLTSEDKKS LEEQWKALQV REFDFYSQKT  360
GFVHQVLAKM AEAFRSNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015438m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641968.10.0probable transcription factor At1g11510
SwissprotC0SUU61e-99STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLR0G9540.0R0G954_9BRAS; Uncharacterized protein
STRINGXP_006299284.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-93DNA-binding storekeeper protein-related transcriptional regulator