PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015496m
Common NameCARUB_v10015496mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 304aa    MW: 35102 Da    PI: 10.3334
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015496mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.6e-2219113199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffk+  + dv ++++  lp +f+++++  ke s ++++++++grsWev++  +k+++  ++ ++GW +Fvk+n L   +f++F+++g+++f  +
  Carubv10015496m  19 FFKAVQSIDVASENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVEI--SKNPRFyFMEKSGWDKFVKDNALGHSEFLTFTHNGNMCF--T 107
                      89999******************99965.57899****************..******555569***************************..9 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      v +f++
  Carubv10015496m 108 VNIFKQ 113
                      999976 PP
2B336.86.8e-122283001796
                      E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++p +fa++h+  +ee+++ ++ +++g +sW+v + ++ +s    +++GW++ vk+  L+ gD++ F+l++ +e  l++ v
  Carubv10015496m 228 RIPVSFAKDHM--PEEKTMFKIHHQDGkKSWNVIYLMKFRS----FSGGWRSVVKEYPLDPGDTCKFTLIEPNE--LLLVV 300
                      79********7..4466789999999989******555555....89*********************997433..34444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-2014115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-2015120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.05719114IPR003340B3 DNA binding domain
CDDcd100179.67E-1919112No hitNo description
PfamPF023621.2E-1919113IPR003340B3 DNA binding domain
SMARTSM010195.9E-2319114IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-15208302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-13210302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.264212303IPR003340B3 DNA binding domain
SMARTSM010191.3E-15215303IPR003340B3 DNA binding domain
PfamPF023625.2E-9228297IPR003340B3 DNA binding domain
CDDcd100176.24E-10228301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MARNGDYLRC LQERKHEGFF KAVQSIDVAS ENMRALPHDF VRSFSDKELS CKMKIRTQWG  60
RSWEVEISKN PRFYFMEKSG WDKFVKDNAL GHSEFLTFTH NGNMCFTVNI FKQNGKEMLQ  120
PSHSRAFLAS SSRVKTEQRR GSVYNDFKKE EVLSPELSNR SPTTVVESNG GESYKRKLSF  180
GKKKAEETQN SKRTEKVVRA RRDSAGASSS SVSEFTILFK KANQIFQRIP VSFAKDHMPE  240
EKTMFKIHHQ DGKKSWNVIY LMKFRSFSGG WRSVVKEYPL DPGDTCKFTL IEPNELLLVV  300
FKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015496m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299339.10.0B3 domain-containing protein At2g16210
SwissprotQ5BPT71e-133Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLR0G9A50.0R0G9A5_9BRAS; Uncharacterized protein
STRINGXP_006299339.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-129B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]