PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015751m
Common NameCARUB_v10015751mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 290aa    MW: 32528.7 Da    PI: 6.1205
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015751mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.12.1e-09134185455
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                       k+ rr + NRe+A rs ++K + i eLe+  k +e+eN  +++++ +l+k 
  Carubv10015751m 134 PKKVRRIMANRESAERSNKKKGQHITELERGTKFFEKENALMINKMTMLEKD 185
                      5899*****************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-5131195IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.703133185IPR004827Basic-leucine zipper domain
PfamPF001709.1E-8135187IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.2E-9135186No hitNo description
SuperFamilySSF579593.73E-8135190No hitNo description
CDDcd147032.44E-15136187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNGGDNTTPP EPRPMTQEAP VNSSLRPLNP SPSSVLHHPL GPVSLSPSTT LNVNRRTQGE  60
SIETLSGHYK SISMDTGLND FLNIPVSSGY ISSTSLVDGD DNTFDLGFAE DVYTANELEK  120
ISKCPKLSKI QNDPKKVRRI MANRESAERS NKKKGQHITE LERGTKFFEK ENALMINKMT  180
MLEKDKIVLH DKKKEFKIRL ESLEEEEKVH NEIEKLKATT TLTEELSVEA QLMKVVLADN  240
ERLSVELQQL KMSASEVMQS HKLFEGSNKH QTDPNMLQQL NVNESNQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015751m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR0HRR30.0R0HRR3_9BRAS; Uncharacterized protein
STRINGXP_006299576.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2177522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G12940.18e-42bZIP family protein