PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015809m
Common NameCARUB_v10015809mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 208aa    MW: 23937 Da    PI: 6.173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015809mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59e-1730120198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk  +ps + +++++++p kf++  g+k   +  +tle++ g + ++kl  ++ ++++++ +GW+eF++a+ +keg f+ F++d++s+f  +v
  Carubv10015809m  30 FFKLVLPSTM-ENNMMRIPPKFVKLQGSK--FPDVVTLETPVGFKRSIKL--KRIGQEIWFHEGWSEFAEAHSIKEGHFLSFEYDENSSF--HV 116
                      6676656555.5567********666655..7789***************..*********************************99999..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +f+
  Carubv10015809m 117 IIFN 120
                      8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-2224121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2424122IPR015300DNA-binding pseudobarrel domain
CDDcd100175.41E-1728120No hitNo description
PROSITE profilePS5086312.71729122IPR003340B3 DNA binding domain
PfamPF023625.8E-1530120IPR003340B3 DNA binding domain
SMARTSM010194.8E-2130122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVTTRKTMAR DTFSSHRRQP QDPESPVKKF FKLVLPSTME NNMMRIPPKF VKLQGSKFPD  60
VVTLETPVGF KRSIKLKRIG QEIWFHEGWS EFAEAHSIKE GHFLSFEYDE NSSFHVIIFN  120
VSASEIDYPP DALQISDSDD DIVDITDKGF IGTQGTRNND QSVNGEHKLK KRPRDIELDK  180
ILHKVDVLDS NQVLKEEEED DKRVFRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173KLKKRPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015809m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299629.11e-151B3 domain-containing protein At3g18960
SwissprotQ84R271e-103Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLR0GA331e-150R0GA33_9BRAS; Uncharacterized protein
STRINGXP_006299629.11e-151(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-104B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]