PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015927m
Common NameCARUB_v10015927mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 125aa    MW: 14303.8 Da    PI: 9.554
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015927mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.6e-30121121100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +Ca C ++++ C ++C  a yfpae++++++ +h+lFG+ +++++++++++ee  ++++ss+++e+ea+++dPv+Ga+g+i+kl+++++  k  
  Carubv10015927m  12 PCAMCTTKNKVCRRNCKSALYFPAEKQREYESAHELFGTPTIMRMMRSADDEEeMSMLASSILMEGEAWTKDPVKGAFGIIQKLKWKIAMRKIY 105
                      7************************************************7666489*************************************9 PP

           DUF260  94 lallkee 100
                      l++l+e+
  Carubv10015927m 106 LDELHEK 112
                      9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.72311113IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-2512108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEGQRISVNR APCAMCTTKN KVCRRNCKSA LYFPAEKQRE YESAHELFGT PTIMRMMRSA  60
DDEEEMSMLA SSILMEGEAW TKDPVKGAFG IIQKLKWKIA MRKIYLDELH EKIKAVRKET  120
KLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015927m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299734.19e-89LOB domain-containing protein 9
SwissprotO821981e-46LBD9_ARATH; LOB domain-containing protein 9
TrEMBLR0GAA12e-87R0GAA1_9BRAS; Uncharacterized protein
STRINGXP_006299734.13e-88(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.15e-49LOB domain-containing protein 9