PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10015980m

Common Name

CARUB_v10015980mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 110aa MW: 12644.7 Da PI: 8.7364

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10015980m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.5	2.5e-29	9	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C+ C +++++C+k+C +++yfp e + +++ ++ lFG+ n++k+++++pe+e++++++s++ e++a+++dPv+G +g++++l ++ +ka l Carubv10015980m 9 PCCICITKNKNCPKNCEFSEYFPYELKDQYESANNLFGTPNIIKTMRRAPEKEKQMLATSIIVEGNAWTKDPVRGGFGMVRNLMWKTVLHKAYL 102 7********************************************************************************************9 PP DUF260 95 allke 99 ++l+e Carubv10015980m 103 HELEE 107 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.948	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-23	9	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MEALRKNGPC CICITKNKNC PKNCEFSEYF PYELKDQYES ANNLFGTPNI IKTMRRAPEK 60 EKQMLATSII VEGNAWTKDP VRGGFGMVRN LMWKTVLHKA YLHELEEKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10015980m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299784.2	4e-77	LOW QUALITY PROTEIN: LOB domain-containing protein 8
Swissprot	Q9ZUP0	3e-54	LBD8_ARATH; LOB domain-containing protein 8
TrEMBL	R0GAE3	2e-76	R0GAE3_9BRAS; Uncharacterized protein
STRING	XP_006299784.1	4e-77	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19510.1	1e-56	LOB domain-containing protein 8

Link Out ? help Back to Top
Phytozome	Carubv10015980m
Entrez Gene	17892740