PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016176m
Common NameCARUB_v10016176mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 208aa    MW: 23769.1 Da    PI: 8.0582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016176mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-1196189280
                      EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTH.HHHHHHHT--TT- CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy.rkksgryvltkGW.keFvkangLkegD 78 
                      +k+l++sdv+ + rl +pk+ a+eh               +g  +++ ++tl d+ ++s +  +   +++ g+yvl+++W k+Fv+++gL++g 
  Carubv10016176m  96 KKTLSKSDVGIQTRLLIPKESANEHilkylteeeiklvedEG--NRGLKITLFDTANKSTNQLCLKrWNSAGSYVLKSNWnKDFVEEKGLEAGK 187
                      699**********************88777666666653322..25556666666655555444334*************557*********98 PP

                      EE CS
               B3  79 fv 80 
                       +
  Carubv10016176m 188 QI 189
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-1491197IPR015300DNA-binding pseudobarrel domain
CDDcd100174.86E-1693206No hitNo description
Gene3DG3DSA:2.40.330.101.4E-1495195IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-897189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNTEDYDNPS LSPTRPRLLD LFPSQSVALD LFPCRSVVLD LFPCQSGDFA RVVPSAARNE  60
RRVVSLAHFR NMPREERDNV STELTLSIEG DIWKIKKTLS KSDVGIQTRL LIPKESANEH  120
ILKYLTEEEI KLVEDEGNRG LKITLFDTAN KSTNQLCLKR WNSAGSYVLK SNWNKDFVEE  180
KGLEAGKQIE LFWNPYASRL HFRVLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016176m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489677.12e-94PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLR0I8N31e-151R0I8N3_9BRAS; Uncharacterized protein
STRINGXP_006299965.11e-152(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.17e-27B3 family protein