PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10016201m

Common Name

CARUB_v10016201mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 242aa MW: 28001.2 Da PI: 10.0342

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10016201m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	55.3	1.8e-17	38	124	4	92
DUF573 4 qrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 +rl w+e+ +i++LqGl+df++ ++k+++dd+ + yef+k+ i f+ ++++veK+ +LK+K + +k +e s s+ d+k +l Carubv10016201m 38 ERLkWNEKAQISMLQGLMDFEDVKKKNAFDDMLETYEFLKDYIVFESYSQEFVEKMMSLKEKLMYHTRK---REERSSSERYDHKGSKLM 124 5777*************************************************************9999...667777788888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.1E-9	41	119	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MGKVNTNESK EKSKGTLLVN KNVNAKRSKK VGKKVCSERL KWNEKAQISM LQGLMDFEDV 60 KKKNAFDDML ETYEFLKDYI VFESYSQEFV EKMMSLKEKL MYHTRKREER SSSERYDHKG 120 SKLMTLVRED DVEHVVEKPK KGKGIAKPKE EKQEAVMVRE GEKWFEDASL VREVVSRGGV 180 DEDILKSKWD AVPVEKKSHM DQKWSVLRAK ENESLSQKSK FLKELVSIIR GASSSSSSRF 240 M*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10016201m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299987.1	1e-173	probable transcription factor At4g00232
TrEMBL	R0I4G6	1e-171	R0I4G6_9BRAS; Uncharacterized protein
STRING	XP_006299987.1	1e-172	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16691	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01370.1	8e-19	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Carubv10016201m
Entrez Gene	17892021