PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016382m
Common NameCARUB_v10016382mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 146aa    MW: 16673 Da    PI: 9.4953
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016382mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61.1e-3178132155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrW+++LH++Fv+ave+LGG++kAtPk+++e+m+v+g++l+hvkSHLQk+Rl
  Carubv10016382m  78 KARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEMMEVEGIALHHVKSHLQKFRL 132
                      68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2775133IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1477132IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-2778133IPR006447Myb domain, plants
PfamPF002495.2E-680130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MIKKKDKGKE IVTSSDHHHK EKVSMILTEQ EIEFLLQSSN KENLEKSKKD NADEKEKSTS  60
SSSSSKIIPC IFYTSDEKAR LRWSSDLHDC FVNAVEKLGG PNKATPKSVK EMMEVEGIAL  120
HHVKSHLQKF RLGRCNIQNG TNQYIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-2078134157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2078134157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2078134157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2078134157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-2078134258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016382m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064132e-39AC006413.4 Arabidopsis thaliana chromosome 2 clone F5K7 map ve013, complete sequence.
GenBankCP0026852e-39CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300151.21e-101myb-related protein 1 isoform X1
RefseqXP_023642296.11e-101uncharacterized protein LOC17893685 isoform X2
TrEMBLR0HTC71e-103R0HTC7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006300151.11e-103(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.17e-66G2-like family protein