PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016398m
Common NameCARUB_v10016398mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20889.1 Da    PI: 9.3702
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016398mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.7e-17251150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     k++e++  r +tfskR+ gi+KK +E   +C++eva+++fs+ gk y+++
  Carubv10016398m  2 KKVEDYADRMITFSKRKGGIFKKMNEFVAMCNVEVAILVFSQAGKAYTFA 51
                     5789*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-13153IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-19171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.787154IPR002100Transcription factor, MADS-box
PfamPF003191.7E-19350IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-83152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKKVEDYADR MITFSKRKGG IFKKMNEFVA MCNVEVAILV FSQAGKAYTF AYPSMDEVAA  60
RLKNPWGQEL VVKDDTVPLV EAYKKRRIQD HMIKMEALDE ELAQDLEKLK LLKKSRKEKK  120
VGKMWWNIPQ EGLSMKEAQR RHRALVELHD NLREMFISLS GNGGASSSSA GSWGCDHSSG  180
DESG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016398m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300167.21e-135agamous-like MADS-box protein AGL28
TrEMBLR0I4Y61e-134R0I4Y6_9BRAS; Uncharacterized protein
STRINGXP_006300167.11e-134(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-58AGAMOUS-like 57