PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016400m
Common NameCARUB_v10016400mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 84aa    MW: 9799.02 Da    PI: 10.0915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016400mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123557123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+Cp+C+ +F +   +  Hi++H
  Carubv10016400m 35 YTCPKCNGMFDTCQKFSAHISSH 57
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MLFEKTTDER SCEENKKSDN DGRTHSLQYK KNGPYTCPKC NGMFDTCQKF SAHISSHYKT  60
ETNKERAQRF RARNKKKYGK INL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016400m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467668.22e-44PREDICTED: uncharacterized protein LOC104747690
TrEMBLR0GBH65e-55R0GBH6_9BRAS; Uncharacterized protein
STRINGXP_006300169.18e-56(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.19e-41C2H2-like zinc finger protein