PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016445m
Common NameCARUB_v10016445mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 231aa    MW: 25311.1 Da    PI: 8.6671
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016445mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.6e-18189224235
             GATA   2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      +  nC++ +Tp+WRrgp g+k+LCnaCG+++rk+ +
  Carubv10016445m 189 TnkNCNALTTPMWRRGPLGPKSLCNACGIKFRKEQE 224
                      5559*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.9E-9184230IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-10185223No hitNo description
PfamPF003205.8E-16188224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-12191224IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.53192220IPR000679Zinc finger, GATA-type
CDDcd002021.97E-9192221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDNDLDLTLK LGLPNSTVET NLSLNTSTTT STITTDQDTN DDRREDNNNN DGGRGDKNNN  60
GGGEVFNLCR AIWGDNKVSN DEGARRSNVD MNIRVYNYIF QQFAGAPNTL NFDTYPMPPP  120
PGSAPAPVTR PEREAYVLID VPASRAQRNN AMLMANAWSE SPSSYGKRLR VGCDGGYCGG  180
RAEGPRKCTN KNCNALTTPM WRRGPLGPKS LCNACGIKFR KEQERKAKRN *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016445m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936251e-47AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300209.11e-169GATA transcription factor 29
SwissprotQ9LT452e-60GAT29_ARATH; GATA transcription factor 29
TrEMBLR0GBK11e-168R0GBK1_9BRAS; Uncharacterized protein
STRINGXP_006300209.11e-169(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-53GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]