PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016477m
Common NameCARUB_v10016477mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 147aa    MW: 17054.8 Da    PI: 8.586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016477mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0588110123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C+  F ++  +  H+++H
  Carubv10016477m  88 YTCPKCTGKFDTSQKFAAHMSSH 110
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.7202.8E-422112IPR016040NAD(P)-binding domain
PROSITE profilePS501578.89188115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
CEILSPEPLR VIFPYQYYAY SQQADMFSAS STHNHDQNNV QVGRPLKKIS NPTMLFEKST  60
DERSCEEIKK SDDDGRTHNL PYEKYGPYTC PKCTGKFDTS QKFAAHMSSH YKTETNNERA  120
ERFRERNKKK YGKRNLEDHG ESQKST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016477m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467668.23e-78PREDICTED: uncharacterized protein LOC104747690
TrEMBLR0I5391e-106R0I539_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006300237.11e-107(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.12e-53C2H2-like zinc finger protein