PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016801m
Common NameCARUB_v10016801mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 660aa    MW: 73230.9 Da    PI: 9.8823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016801mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-0852103247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 
                      + W t++++ l++avk++   +W+++a++++      +  ++ +c++++q++
  Carubv10016801m  52 QVWGTWDELVLACAVKRHAFTDWDSVAKEVQarsrssLIVSAVNCRLKYQDL 103
                      68*****************************755555333677888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002496.9E-752103IPR001005SANT/Myb domain
CDDcd001670.0015254104No hitNo description
SMARTSM002973.9E-20289398IPR001487Bromodomain
SuperFamilySSF473701.96E-18291396IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.1E-19296422IPR001487Bromodomain
CDDcd043691.13E-14300393No hitNo description
PfamPF004392.6E-12301382IPR001487Bromodomain
PROSITE profilePS5001413.423308379IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MKEEEEEEET VISNGMNDDD DTNNINSCSG FDNNRVGDGD GDDNSNLNQI SQVWGTWDEL  60
VLACAVKRHA FTDWDSVAKE VQARSRSSLI VSAVNCRLKY QDLKRRFEDS VDGGERNSDA  120
AAAAVEDDEV GEISWLDQLR SLRVAELRRD VQRCDDSILS LQLKVKKLEE EKDGDDGDNK  180
PDLGNDETKP EKLNRETAES DRDENRSMNE SNSTASVDKI ADHDRLDGDK MVPAYPDPDP  240
VYKDAEEGEK TVSKRSEMSN SGELDESGTS TGNGKRKEKK YRSGGGGGDI KSAGYKSQPL  300
KDIIKLIRSH PRGSVFESHL RSQETKDYKR LIRQHLDIKT IEKKLEKGSY VSSTLSFYRD  360
LKLLFTNAIV FFPPSSSESM AAHELRSLVS NQIKKPTGML GHDVVKAEAG SSVSRPKSSV  420
LPLVACKKNS SSSKKSSPSS SSKQKDDKKS QEVSEEKTVT TTTTTTTSAR SSRRTSKEVA  480
VVAKDTKTGR AKNNNKKQKK VTKTESSSDD DSEKEETPKT EKKTVAIASD KKKSVADFLK  540
RIKKNSPKKG KETTSKAQKK SDGNSKKESE HQKKSDGNSK KESEHQKKSD GNAKKENSKA  600
KPRELRSNST GKKKAEVENN NSKSSSKRKQ PKETAEPTTV KRGRESVKES KQPKKRSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016801m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563930.0AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005190.0BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290704.10.0DNA ligase 1
TrEMBLR0FMA50.0R0FMA5_9BRAS; Uncharacterized protein
STRINGXP_006290704.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein