PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016973m
Common NameCARUB_v10016973mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 541aa    MW: 60707.1 Da    PI: 4.9956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016973mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.83.9e-10319254022374
             GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                      ++L++++e +s+ g+p++R+ +yf+eAL+++ ++          ps++++++ +e + ++k++++++P+ kf+hltaNqaIlea+++++ +Hi+
  Carubv10016973m 192 ETLTQIRESVSELGNPIERVGFYFVEALSHKETE----------PSPAASSSLEEFILSYKTLNDACPYSKFAHLTANQAILEATSQSQNIHIV 275
                      789**************************99887..........666666789***************************************** PP

             GRAS 116 DfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                      Df+i qG+QW aLlqaLa+R++g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fefn+ v + ++ l+ +++rv+p+E+l+Vn+
  Carubv10016973m 276 DFGIFQGIQWSALLQALATRASGKPtRIRISGIPAPSLGdsPEPSLIATGNRLRDFAAILDLNFEFNP-VLTPIQLLTGSSFRVDPDEVLVVNF 368
                      *********************77776**********99998999************************.799********************** PP

             GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                      +l+l++llde+++      + L+l +sl+P++v++ e e+++n+ +F++r+ ++l++ysa+f+sle +l r+s+er+ vEr+l+gr+i+++v +
  Carubv10016973m 369 MLELYKLLDETATGVG---TALRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLERDSKERQRVERVLFGRRISELVRT 459
                      ********99999888...9***********************************************************************987 PP

             GRAS 301 egae.....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                       + +     r   +e++e+Wr  +e+aGF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  Carubv10016973m 460 GNVNikpgtRLGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNNVPLLTVSSWR 540
                      6554333338899*************************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.223146518IPR005202Transcription factor GRAS
PfamPF035141.4E-100192540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQQQQKQQE QEEQQQRQEH DQQNQSFGFS DPFQVSNDPG  60
FHFPHLEHHR NTSDGFRFSD GGEFDSDEWM ETLINGGDSL QTNPDFSIYG HDPFVTFPSR  120
LSVPSKDNDS ASQQLSQPPA STAIWTPSPP SPQQHHPPPP PPPTPPQPDF DLNQPILKAI  180
YEYARKPGTI PETLTQIRES VSELGNPIER VGFYFVEALS HKETEPSPAA SSSLEEFILS  240
YKTLNDACPY SKFAHLTANQ AILEATSQSQ NIHIVDFGIF QGIQWSALLQ ALATRASGKP  300
TRIRISGIPA PSLGDSPEPS LIATGNRLRD FAAILDLNFE FNPVLTPIQL LTGSSFRVDP  360
DEVLVVNFML ELYKLLDETA TGVGTALRLA RSLNPRIVTL GEYEVSLNRV EFANRVKNSL  420
RFYSAVFESL EPNLERDSKE RQRVERVLFG RRISELVRTG NVNIKPGTRL GLMEEKEQWR  480
VLMEKAGFEP VKPSNYAVSQ AKLLLWNYNY STLYSLVESE PGFISLAWNN VPLLTVSSWR  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1301735401375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016973m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639261.10.0scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLR0FMQ80.0R0FMQ8_9BRAS; Uncharacterized protein
STRINGXP_006290864.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]