PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017026m
Common NameCARUB_v10017026mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 519aa    MW: 58177.2 Da    PI: 4.6746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017026mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.35.7e-10317851822374
             GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                      ++L +++e +s+ g+p++R+ +yf+eAL+++ ++         p+ ++s+++ +e + ++k++s+++P+ kf+hltaNqaIlea+++++ +Hi+
  Carubv10017026m 178 EALIQIRESVSELGNPIERVGFYFAEALSHKETE---------PSPAASSSSLEEFILSYKTLSDACPYSKFAHLTANQAILEATSQSQNIHIV 262
                      5799**************************9998.........55555556799**************************************** PP

             GRAS 116 DfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                      Df+i qG+QW aLlqaLa+R++g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fefn+ v + ++ l+ +++rv+p+E+l+Vn+
  Carubv10017026m 263 DFGIFQGIQWSALLQALATRASGKPiRIRISGIPAPSLGdsPEPSLIATGNRLRDFAAILDLNFEFNP-VLTPIQLLTESSFRVDPDEVLVVNF 355
                      *********************98888**********99998999************************.799********************** PP

             GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                      +l+l++llde+++      + L+l +sl+P++v++ e e+++n+ +F +r+ ++l++ysa+f+sle +l r+s+er+ vEr+l+gr+i+++v +
  Carubv10017026m 356 MLELYKLLDETATGVG---TALRLARSLNPRIVTLGEYEVSLNRVEFSNRVKNSLRFYSAVFESLEPNLERDSKERSRVERVLFGRRISELVRM 446
                      ********99999888...9*************************************************************************9 PP

             GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                       +      +e++e+Wr  +e+aGF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  Carubv10017026m 447 DNGL----MEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNNVPLLTVSSWR 518
                      9998....999**********************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.19132496IPR005202Transcription factor GRAS
PfamPF035142.0E-100178518IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQQQEEEQQ QDQQNQSFGF SDPFQVSNDP GFHFPHLEHH  60
RNTSDGFMFS DGGEFDSDEW IETLINGGDS LQTNPDFSIY GHDSFFTFPG RLSAPSKDND  120
SASQQLSQPP DSAAMWTPSP PSPQHHHSPP PPPQDFDLNQ PILKAIYDYA RKPGTKPEAL  180
IQIRESVSEL GNPIERVGFY FAEALSHKET EPSPAASSSS LEEFILSYKT LSDACPYSKF  240
AHLTANQAIL EATSQSQNIH IVDFGIFQGI QWSALLQALA TRASGKPIRI RISGIPAPSL  300
GDSPEPSLIA TGNRLRDFAA ILDLNFEFNP VLTPIQLLTE SSFRVDPDEV LVVNFMLELY  360
KLLDETATGV GTALRLARSL NPRIVTLGEY EVSLNRVEFS NRVKNSLRFY SAVFESLEPN  420
LERDSKERSR VERVLFGRRI SELVRMDNGL MEEKEQWRVL MEKAGFEPVK PSNYAVSQAK  480
LLLWNYNYST LYSLVESEPG FISLAWNNVP LLTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1301595181375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017026m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290913.10.0scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLR0FP170.0R0FP17_9BRAS; Uncharacterized protein
STRINGXP_006290913.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]