PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017199m
Common NameCARUB_v10017199mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 461aa    MW: 51273.6 Da    PI: 5.7912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017199mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11e-50131411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+G+rF+Ptdeel+ +yL+kk++g++ ++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgkd+++
  Carubv10017199m  13 LPVGLRFRPTDEELIRYYLRKKINGHDGDV-KAIREIDICKWEPWDLPdfSVIKTKDSEWLFFCPLDRKYPNGSRQNRATVAGYWKATGKDRKI 105
                      799************************999.88***************6448889999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++k++ +g+k+tLvf+ grapkg++t+Wv+heyr+
  Carubv10017199m 106 KTSKTNIIGVKRTLVFHAGRAPKGTRTNWVIHEYRA 141
                      **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-567164IPR003441NAC domain
PROSITE profilePS5100554.52513164IPR003441NAC domain
PfamPF023652.1E-2414140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNQNLEVLSM DSLPVGLRFR PTDEELIRYY LRKKINGHDG DVKAIREIDI CKWEPWDLPD  60
FSVIKTKDSE WLFFCPLDRK YPNGSRQNRA TVAGYWKATG KDRKIKTSKT NIIGVKRTLV  120
FHAGRAPKGT RTNWVIHEYR ATENDLSGTN PGQSPFVICK LFKKQELNLA EEDSKSDEAE  180
PAVSSPTVEV SEVTKTEDVK PYDIAESSLV ISGDSHSDAC DEATTAELVD FDWYPELESL  240
DCKLFSPFYS QVQCELGSTF QPGPSNFLGN DTNSFQVQTQ YGTNEENTHI SEFLDSILQS  300
PDEDPEKHKY VLQSGFDGAT PDQIAPAYPQ GTAVRMSNDV SVTGIKIRSR QAQPSGCTND  360
YIAQGNGPRR LRLQTNLNGS NSKNPDLKAI KREAVDTVDE TMKIGCGKLM RSKNQTGFVF  420
KRITSLKCSY GGLLRAAVVA VVFLMSVCSL TVDFRASAVP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-4731657166NO APICAL MERISTEM PROTEIN
1ut4_B9e-4731657166NO APICAL MERISTEM PROTEIN
1ut7_A9e-4731657166NO APICAL MERISTEM PROTEIN
1ut7_B9e-4731657166NO APICAL MERISTEM PROTEIN
4dul_A9e-4731657166NAC domain-containing protein 19
4dul_B9e-4731657166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017199m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597340.0AY059734.1 Arabidopsis thaliana putative NAC2 protein (At3g49530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291082.10.0NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLR0HFW30.0R0HFW3_9BRAS; Uncharacterized protein
STRINGXP_006291082.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]