PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017469m
Common NameCARUB_v10017469mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 370aa    MW: 38125.8 Da    PI: 7.7676
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017469mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.71e-701352822152
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 
                      +sg++sCqdCGnqakkdCah+RCRtCCksrgf+C thv+stWvpaakrrerqqqla+ + +++  + e+ +kr+re+  +++s+l +t+++s++
  Carubv10017469m 135 GSGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFECPTHVRSTWVPAAKRRERQQQLATVHPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHS 228
                      57899*****************************************************99999999************************9995 PP

           DUF702  96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                          le+ ++P+evss+avfrcvrvssv+dgeee+aYqtavsigGhvfkGiLyd+G 
  Carubv10017469m 229 ---GLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHVFKGILYDHGR 282
                      ...78999***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-64138281IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-27140182IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.6E-27235281IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSESWLW YRNPNANANT NANAPSSSTN  60
AALGTLELWQ NHNQQEIMFQ HQQHQQRLDL FSSAAGLGVG PSNPSQFDIS GETSNAGAGR  120
ASGLMMIRSG GGGGGSGGVS CQDCGNQAKK DCAHMRCRTC CKSRGFECPT HVRSTWVPAA  180
KRRERQQQLA TVHPQTQLPR GESVPKRHRE NLPATSSSLV CTRIPSHSGL EVGNFPAEVS  240
SSAVFRCVRV SSVEDGEEEF AYQTAVSIGG HVFKGILYDH GRPGSSGGGG YNVVAAGESS  300
SGGGGAQQLN LITAGSVTVA TASSSTPNLG GGIGSSSAAA ATYIDPAALY PTPINTFMAG  360
TQFFPSPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017469m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295090.0BT029509.1 Arabidopsis thaliana At3g51060 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291335.10.0protein SHI RELATED SEQUENCE 1
SwissprotQ9SD400.0SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLR0HK220.0R0HK22_9BRAS; Uncharacterized protein
STRINGXP_006291335.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-166Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]