PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017537m
Common NameCARUB_v10017537mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 353aa    MW: 38261.7 Da    PI: 8.689
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017537mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.6e-3972131362
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Carubv10017537m  72 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 131
                      6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3755124IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3274129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.23675129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVFSSLPLNQ FDSHNWQQQG SQQQLDSVTT DHNPSNYLRQ LSSPPASQAG SSQARVNSMV  60
ERARIAKIPL PEAALNCPRC DSTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV  120
GGGFRRNKRS KSNGGRSKST VLVSADNNTT TSSLTSHPSY SNPSKFLSYS QSQGFTSSLP  180
ILPPLQSLGD YNSSNNGLDF GGIQIGNVIS GVSSSARILD PWRVPSSQQA QQFPFLINTT  240
GLVQSSNAVY PLLEGNEAVS QADPQQKSSD YSNQLMTDLA SGGDGAAQTR NVKAEENDQD  300
QGRDVDGQNN LSRNFLGNIN INSSGNDEYT SWGGNTSWTG FTSNNATGHL SF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017537m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291398.10.0dof zinc finger protein DOF3.6 isoform X1
SwissprotQ9M2U10.0DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLR0FQ930.0R0FQ93_9BRAS; Uncharacterized protein
STRINGXP_006291398.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-170OBF-binding protein 3