PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017859m
Common NameCARUB_v10017859mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 262aa    MW: 29836.8 Da    PI: 6.0368
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017859mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.2e-27131191259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dD y+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r +edp ++ +tY+++H+++
  Carubv10017859m 131 DDNYTWRKYGQKEILGSRFPRAYYRCTHQklyKCPAKKQVQRLDEDPYTFRVTYRSSHTCH 191
                      8****************************9999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-27128191IPR003657WRKY domain
SuperFamilySSF1182901.18E-24129192IPR003657WRKY domain
SMARTSM007749.0E-34130192IPR003657WRKY domain
PfamPF031061.4E-24131191IPR003657WRKY domain
PROSITE profilePS5081120.162131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEIMTMIFN GINLVKELEF SLSSQELPES DLSNSLGSIS TLFGDANERL KSQLAWKNSL  60
AQLEPVRMMD MMMETEPALT QQDHWIRYPV MQTVKGNDDT SRPRHRPRKK DIGGEETVLM  120
AAMGRIEIPP DDNYTWRKYG QKEILGSRFP RAYYRCTHQK LYKCPAKKQV QRLDEDPYTF  180
RVTYRSSHTC HFFATSLTSS AHVHATTPAA NVPAVVNLAE TMIGNMDSVV PFGELPYFNH  240
HCLVPGDDAN CEDTWNYDMS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20131190968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017859m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291695.10.0WRKY transcription factor 55
SwissprotQ9SHB56e-71WRK55_ARATH; WRKY transcription factor 55
TrEMBLR0HL290.0R0HL29_9BRAS; Uncharacterized protein
STRINGXP_006291695.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-68WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]