PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017870m
Common NameCARUB_v10017870mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 259aa    MW: 29198.8 Da    PI: 9.0993
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017870mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.42.7e-40191501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+    +++++ ++w fF++r++++a+g r++r+t+sgyWkatg+  
  Carubv10017870m  19 LPVGFRFYPTEVELLTFYLRIQLGGGSATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTRSGYWKATGSPG 112
                      79****************************999**************9656766667888********************************** PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++
  Carubv10017870m 113 PVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 150
                      ************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4416175IPR003441NAC domain
PROSITE profilePS5100546.78319175IPR003441NAC domain
PfamPF023656.5E-2020149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MCQLQQHTNE MGEDHHHELP VGFRFYPTEV ELLTFYLRIQ LGGGSATIHS LIPILDVFSV  60
EPTQLPNLAG ERCRGDAEQW LFFVPRQERE ARGGRPSRTT RSGYWKATGS PGPVFSPDNR  120
VIGVKKTMVF YTGKAPTGRK TKWKMNEYKA VDETTSVSTN PKLRNEFSIC RIYIKSGISR  180
AFDRRPTETY GIERRVPSNR VESSSRATTS TSLETSHSGG NKVDLSVNNA NTSITQSISE  240
MVDGLSQPFW EWEQMNWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-321917517165NO APICAL MERISTEM PROTEIN
1ut4_B6e-321917517165NO APICAL MERISTEM PROTEIN
1ut7_A6e-321917517165NO APICAL MERISTEM PROTEIN
1ut7_B6e-321917517165NO APICAL MERISTEM PROTEIN
4dul_A6e-321917517165NAC domain-containing protein 19
4dul_B6e-321917517165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017870m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386413e-89AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBankCP0026863e-89CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291704.20.0putative NAC domain-containing protein 61
SwissprotQ9M2901e-141NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLR0FPZ00.0R0FPZ0_9BRAS; Uncharacterized protein
STRINGXP_006291704.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-147NAC domain containing protein 61