PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10017947m

Common Name

CARUB_v10017947mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 241aa MW: 26632 Da PI: 6.2546

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10017947m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4e-11	52	98	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr+ll + K +Ka+ L k+v+ +k+L Carubv10017947m 52 RNHKEAERRRRERINSHLNTLRSLLSCN-----SKTDKATLLAKVVQRVKEL 98 58*********************997.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	50	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-9	52	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-12	53	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-10	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	1.4E-5	137	209	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-4	137	206	No hit	No description
CDD	cd04873	6.43E-5	138	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MQPEISDHIF YSFLTGGLCA STTSTSTTRT SSFYPFAIED TISQDKALAS LRNHKEAERR 60 RRERINSHLN TLRSLLSCNS KTDKATLLAK VVQRVKELKQ QTLGIADETL PSETDEISVI 120 NSEEYCSDND DGRIIFKVSF SCEDRPDLLQ DLMETLDSLQ METLFADMTT VGGRSRNVLV 180 VAADKERHGV DSVQFLQNAL KSLLERSSKS VMMGHGGGGG GGGGGERLKR RRELDHIIMV 240 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	62	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10017947m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291776.1	1e-177	putative transcription factor bHLH107
Swissprot	Q9LET0	1e-120	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	R0H5W5	1e-175	R0H5W5_9BRAS; Uncharacterized protein
STRING	XP_006291776.1	1e-176	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3642	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	1e-121	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10017947m
Entrez Gene	17886924

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]