PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10017961m

Common Name

CARUB_v10017961mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26781.3 Da PI: 8.1056

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10017961m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	98	152	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k Carubv10017961m 98 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARSK 152 78889************************************************98 PP
2	HD-ZIP_I/II	117.9	5.7e-38	98	186	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ Carubv10017961m 98 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 186 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-18	79	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-19	85	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	94	154	IPR001356	Homeobox domain
SMART	SM00389	2.5E-17	96	158	IPR001356	Homeobox domain
CDD	cd00086	1.97E-15	97	155	No hit	No description
Pfam	PF00046	9.2E-16	98	152	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	129	152	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.7E-9	154	188	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	7.0E-22	154	197	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
LIFLSNFTHF FFLFLSSSIL LLRTLANQKY SDQMAILPEN SSNLDLTISV PGFSSSPPSD 60 EGSGGGREQL KLDMNRLPSS EDGEDEELSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT 120 LNPKQKEALA QHLMLRPRQI EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL TEQNHRLHRE 180 VEELRAMKVG PPTVNSASSL TMCPRCERVT TAATPPNSMA VPARKTFPPQ ERED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10017961m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ431181	0.0	AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290380.2	1e-147	homeobox-leucine zipper protein ATHB-17
Swissprot	Q8S9N6	1e-137	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	R0HHK2	1e-172	R0HHK2_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006290380.1	1e-172	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-120	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	Carubv10017961m
Entrez Gene	17884991

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]