PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10018121m

Common Name

CARUB_v10018121mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 173aa MW: 20079.2 Da PI: 6.0126

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10018121m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.6	1.8e-15	80	138	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK+ ++eL v L eN++L ++l++l++ +k+ +e+ Carubv10018121m 80 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHDKVLQEN 138 689*************************************************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-14	76	140	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-11	78	132	No hit	No description
PROSITE profile	PS50217	10.875	78	141	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.75E-13	80	130	No hit	No description
Pfam	PF00170	7.5E-14	80	138	IPR004827	Basic-leucine zipper domain
CDD	cd14702	4.40E-19	81	132	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MQPRTDIFSL HNYINSSVPS PYPSSFPLST PFPSNGPNPN PLYGFQSYTN NPQSMSQSSN 60 NSTSDEAEEH QTDNNIINER KQRRMISNRE SARRSRMRKQ RHLDELWSQV MWLRIENHQL 120 LDKLNNLSES HDKVLQENAQ LKEETSELKE VISNMQIQSP FSCFRDDIIP IE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	99	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00389	DAP	Transfer from AT3G30530	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10018121m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016878	1e-178	AB016878.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15.
GenBank	CP002686	1e-178	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291935.1	1e-123	basic leucine zipper 43
Swissprot	Q9FMC2	5e-65	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	R0HLN7	1e-122	R0HLN7_9BRAS; Uncharacterized protein
STRING	Cagra.10423s0001.1.p	1e-123	(Capsella grandiflora)
STRING	XP_006291935.1	1e-123	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-82	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Carubv10018121m
Entrez Gene	17886243

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]