PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10018123m

Common Name

CARUB_v10018123mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 173aa MW: 19212.1 Da PI: 6.1556

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10018123m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	82.7	9.5e-26	4	76	13	81
TCP 13 TkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssss 81 T+ R RR+Rl+++caa++F+L++eLGf++d+ t+ WLl++a+pai ++tg s++++s++ ++s +s Carubv10018123m 4 TSSKDRHRRIRLPVTCAAQVFQLTQELGFKTDGATVGWLLRNAEPAILAATGHgldttSNDTPSDF-NHSYMNS 76 78889************************************************7654422222222.2222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	18.26	1	53	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-21	8	78	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MTPTSSKDRH RRIRLPVTCA AQVFQLTQEL GFKTDGATVG WLLRNAEPAI LAATGHGLDT 60 TSNDTPSDFN HSYMNSYNFH GNHIFYNSPI DNSVHYADTS GLVSHPRENI TGHQFPGAST 120 SFPDLMVNHY RPGHGMLRPS VPQPQPQQQP LSDDFDEVET VMGEQGYYQP RE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10018123m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291936.2	1e-128	transcription factor TCP15
TrEMBL	R0H6B8	1e-126	R0H6B8_9BRAS; Uncharacterized protein
STRING	XP_006291936.1	1e-127	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16163	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	5e-25	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Carubv10018123m
Entrez Gene	17887148