PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018314m
Common NameCARUB_v10018314mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 93aa    MW: 10715.1 Da    PI: 9.3615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018314mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-0619591554
                     HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +i +  ++Lr+ lP+ + + +s K+s   +L+++++YI+ L
  Carubv10018314m 19 QIIDLVSKLRQFLPEiRERRRSDKVSATKVLQETCNYIRRL 59
                     5667779********999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.629459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-61875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-72079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS SASRISDDQI IDLVSKLRQF LPEIRERRRS DKVSATKVLQ ETCNYIRRLH  60
REVDNLSDRL SQLLESVDED SPEAAVIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018314m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246401e-114BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292118.11e-57transcription factor PRE5
SwissprotQ9LJX14e-55PRE5_ARATH; Transcription factor PRE5
TrEMBLR0FRX53e-56R0FRX5_9BRAS; Uncharacterized protein
STRINGCagra.3344s0001.1.p4e-57(Capsella grandiflora)
STRINGXP_006292118.14e-57(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-43bHLH family protein