PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018375m
Common NameCARUB_v10018375mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 122aa    MW: 14501.8 Da    PI: 7.8397
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018375mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26081.11.8e-256100498
           DUF260   4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck  r +C ++Cv+apy+pa+++ k+  + k++ ++++ +++ +++++er++ ++s ++eAear+rdPv G++g i+ lq qle++k  ++ +
  Carubv10018375m   6 TCKEVRHNCIEECVFAPYLPATNKDKYTKLSKVYDMRRLAQYVMDIEPSERQICVDSFCFEAEARLRDPVFGVTGYIHLLQLQLEEVKRLIQIA 99 
                      7*************************************************************************************99877665 PP

           DUF260  98 k 98 
                      k
  Carubv10018375m 100 K 100
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5112103IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-24699IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEYSCTCKEV RHNCIEECVF APYLPATNKD KYTKLSKVYD MRRLAQYVMD IEPSERQICV  60
DSFCFEAEAR LRDPVFGVTG YIHLLQLQLE EVKRLIQIAK RDHMMILQLQ RNRQNHRHDH  120
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-1869914107LOB family transfactor Ramosa2.1
5ly0_B5e-1869914107LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018375m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101899.12e-35PREDICTED: LOB domain-containing protein 6-like
TrEMBLR0FR772e-85R0FR77_9BRAS; Uncharacterized protein
STRINGXP_006292169.14e-86(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.29e-23LOB domain-containing protein 10