PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10018433m

Common Name

CARUB_v10018433mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 152aa MW: 16953 Da PI: 10.2167

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10018433m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.1	7.8e-31	12	145	3	103
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg...... 88 +++++h+++h vggRdRR+Rl+a++a ++F+L++eLGf +d++t++WLlq+a+pai ++tg ++++++ +++++ + Carubv10018433m 12 KATRSHKDRHVRVGGRDRRIRLPANVAPQLFKLTKELGFHTDGETVNWLLQNAEPAIFAATGHgiNTTPNNVINSNNNI--------Hryslis 97 5789***********************************************************7744444333111111........1112223 PP TCP 89 .................................kaaksaakskksqks 103 ka+++ ++++++q++ Carubv10018433m 98 gnnctinniftctgvntghpemvfpgtsstfpvKAEEDVPNQNQQQQQ 145 333445566666666666666777776666665333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-26	16	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.86	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MVSRKEMKNQ QKATRSHKDR HVRVGGRDRR IRLPANVAPQ LFKLTKELGF HTDGETVNWL 60 LQNAEPAIFA ATGHGINTTP NNVINSNNNI HRYSLISGNN CTINNIFTCT GVNTGHPEMV 120 FPGTSSTFPV KAEEDVPNQN QQQQQQPQGP QL

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	Transfer from AT3G45150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10018433m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292227.2	1e-110	transcription factor TCP16
Swissprot	Q9M1U4	2e-50	TCP16_ARATH; Transcription factor TCP16
TrEMBL	R0HIU4	1e-109	R0HIU4_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006292227.1	1e-110	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	2e-27	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Carubv10018433m
Entrez Gene	17885564

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]