PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018465m
Common NameCARUB_v10018465mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 470aa    MW: 52171.1 Da    PI: 8.228
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018465mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.84.2e-27277329255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       r++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl
  Carubv10018465m 277 SRVVWSIELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLSRENVASHLQKFRL 329
                      69******************.********************************8 PP
2Response_reg72.51.7e-24992071109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +l+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++   ++ 
  Carubv10018465m  99 ILVVDDDTSCLFILEKMLLRLMY-QVTICSQADVALTLLRERKdcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTTTVMTGINH 190
                      89*********************.***************99999***********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ peel +
  Carubv10018465m 191 GACDYLIKPIRPEELKN 207
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.41E-3495221IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.3E-4096220No hitNo description
SMARTSM004481.5E-2897209IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.23898213IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2199207IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.90E-26100212No hitNo description
PROSITE profilePS512949.645273332IPR017930Myb domain
SuperFamilySSF466894.66E-18274333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27274334IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23277329IPR006447Myb domain, plants
PfamPF002492.4E-6278327IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAVTISASSL HDWLYTSNIA ISSLYPYSSS SSSPPTSSLT LLRAQHRNAF EAALLSAANA  60
TTGGTVNRGF HLFNTHTKAY SFLHLQMAIS DQFPTGLRIL VVDDDTSCLF ILEKMLLRLM  120
YQVTICSQAD VALTLLRERK DCFDLVLSDV HMPGMNGYKL LQQVGLEMDL PVIMMSVDGR  180
TTTVMTGINH GACDYLIKPI RPEELKNIWQ HVVRRKCTMN KELGNSQVLE DNKNSGSVET  240
VYSASECSEG SLMKRKKKKR SVDREDNEDD ENSKKSSRVV WSIELHQQFV NAVNQLGIDK  300
AVPKRILELM NVPGLSRENV ASHLQKFRLY LKRLSGVASQ SKDTECIKRY ENIQAMVSSG  360
QLHPQTLAAL FGQPVENHLS ASFGVWIPND DLGSGRSHIQ NFAVDVSSTS DRPVSVTTSM  420
AVHGLSSSAN FSQKGDADNS NRDHRIRQGY GSNVNEESWI LGKCSRQRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19273335264ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259KRKKKKR
2254259RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018465m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881490.0AY088149.1 Arabidopsis thaliana clone 41875 mRNA, complete sequence.
GenBankAY0997260.0AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638473.10.0two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLR0H7860.0R0H786_9BRAS; Two-component response regulator
STRINGXP_006292256.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.10.0response regulator 14