PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018517m
Common NameCARUB_v10018517mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 131aa    MW: 15005.5 Da    PI: 8.0543
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018517mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.83.9e-2951014100
           DUF260   4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck  + +C ++Cv+apy+pa++p+k++ + k+F  s v +l+  ++++++++ ++sl++eAear+rdPv G++g+i++lq+ql++l+ + + +
  Carubv10018517m   5 ECKNVKHACIEECVFAPYLPANKPEKYNTLSKVFDISSVAELVMGIEPSQKQACVDSLCFEAEARLRDPVMGCTGLIHQLQHQLQNLQIQSKIA 98 
                      59999***********************************************************************************999988 PP

           DUF260  98 kee 100
                      k+e
  Carubv10018517m  99 KRE 101
                      876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3161102IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-29598IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MESCECKNVK HACIEECVFA PYLPANKPEK YNTLSKVFDI SSVAELVMGI EPSQKQACVD  60
SLCFEAEARL RDPVMGCTGL IHQLQHQLQN LQIQSKIAKR ELMMVLQEIH NRNRIAQRQN  120
LQQLYIRSRF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-24610315112LOB family transfactor Ramosa2.1
5ly0_B7e-24610315112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018517m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101899.12e-42PREDICTED: LOB domain-containing protein 6-like
TrEMBLR0H7D03e-91R0H7D0_9BRAS; Uncharacterized protein
STRINGXP_006292306.15e-92(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.42e-22LBD family protein